Keywords : Phylogenetic analysis


Clinical and molecular detection of Sarcoptes scabiei in the Iraqi camels

Mohammad H. Al-Hasnawy; Hamed A. Al-Jabory; Lina S. Waheed

Iraqi Journal of Veterinary Sciences, 2022, Volume 36, Issue 4, Pages 923-930
DOI: 10.33899/ijvs.2022.132573.2106

Sarcoptes scabiei var cameli is the most frequent zoonotic species of mites causing mange in camels worldwide. The prevalence of camel’s mange in Iraq is still little studied. Thus, this research is conducted to detect S. scabieiin camels in the four provinces of the Middle-Euphrates area: Al-Muthanna, Al-Diwaniyah, Najaf, and Babil, from January 2020 to December 2020. The Molecular technique depending on the conventional polymerase chain reaction (cPCR) is performed for the direct detection of S. scabiei based on the mitochondrial cytochrome oxidase subunit 1 (COX1) gene from skin scrape lesion samples. The results reveal that 125 out of 425 samples (29.41%) of the examined camels are infested with S. scabiei. According to the sex of the infested animals, the infestation rate was higher in females than in males, 85 (30.91 %) and 40 (26.67%) respectively. In addition, the 1.5 year age shows the highest number of infestation (83 out of 85) with a percentage of 97.65%, but the percentages are 21 out of 60 (35%) and four out 68 (5.88%) in 2 and 7 years old animals, respectively. The results also record that infested animals found in Najaf and Al-Diwaniyah have the highest number of infestations, with of 36% and 35%, respectively. The findings also demonstrate that the highest infestation percentage is during the winter months (January and February), with of 92.31% and 80%, respectively. The sequencing and phylogenetic analysis shows that the local isolates of the Iraqi camels are consistent with the isolates recorded in China.

Molecular identification and phylogenetic analysis of lactic acid bacteria isolated from goat raw milk

Zahra K. Saeed; Basil A. Abbas; Rasha M. Othman

Iraqi Journal of Veterinary Sciences, 2020, Volume 34, Issue 2, Pages 259-263
DOI: 10.33899/ijvs.2019.125896.1176

The aim of this study was to identify the genetic diversity of lactic acid bacteria (LAB) isolated from the local goat's milk. A total of 100 raw milk samples were collected from the different Basrah local markets. All the samples were cultured in the De man, Rogosa, and Sharpe (MRS) medium which enhances the growth of lactic acid bacteria. The result of the study showed that the only 64 lactic acid bacteria isolated gave the Gram-positive and catalase-negative were 64 (64%). All the suspected isolates were detected and identified by using polymerase chain reaction (PCR) targeting the 16S rRNA gene and DNA sequencing. The sequencing results showed that 9 strains belong to Lactococcus spp. and 6 strainsbelongto Lactobacillus spp. and all tested isolates had similarity over 99% with those recorded in the GenBank of The National Centre for Biotechnology.

Phylogenetic study of Theileria lestoquardi based on 18SrRNA gene Isolated from sheep in the middle region of Iraq

M.J.A. Alkhaled; N.N. A'aiz; H.H. Naser

Iraqi Journal of Veterinary Sciences, 2016, Volume 30, Issue 2, Pages 27-32
DOI: 10.33899/ijvs.2016.121380

Theileriosis is parasitic infection causes by obligate intracellular protozoa of the genus Theileria. T. lestoquardi is the most virulent species in sheep and goats which causes a severe disease with a high morbidity and mortality rate. In this study the phylogenetic relationships between two local isolate of T. lestoquardi and nine T. lestoquardi global isolates as well as Babesia ovis out-group isolate were analyzed using the 18S rRNA gene sequence. The multiple sequence alignment analysis and neighbor joining phylogenetic tree analysis were performed by using ClustalW multiple sequence alignment online based analysis of 1098bp 18S rRNA gene was amplified by polymerase chain reaction. Phylogenetic analysis results of these gene sequences revealed that T. lestoquardi local isolates were closely related to T. lestoquardi Iran isolate (JQ917458.1) and two Iraq Kurdistan isolates (KC778786.1 and KC778785.1) more than other countries. This study represents the first report on the use of molecular phylogeny to classify T. lestoquardi obtained in Middle Region of Iraq.